E-CRISP Sequence Alignment & Homology Peak Detection

E-CRISP
Design of CRISPR constructs

Check out our new CRISPR Library Designer (CLD): batch design of sgRNA libraries Download the dockerized version now at CLD on Git\ hub

Select organism: [HELP]
1. Enter sequences to align
Input is GeneSymbol
Input is FASTA sequence
TNFRSF10A;TNFRSF10B;TNFRSF10C FASTA example \| GeneSymbol example \| Clear [HELP]
case-sensitive search in ENSEBML Ids search in gene symbols search sensitivity: lowhigh	Search results (click to add, scroll down to see full list) Search results (click to remove, scroll down to see full list)

2. Set up Peak detection parameters
Sequence length to look for: bp
Enable dynamic peak tracking (faster, but less accurate, suitable when aligning large sequences)	speed of dynamic search:
Merge overlapping homology peaks (directly consecutive peaks will always be merged)

3. Start the aligning process:

Boutros lab, E-CRISP-Version 5.4
For suggestions please contact us at crispr@dkfz.de